PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco002597.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family FAR1
Protein Properties Length: 523aa    MW: 59928.1 Da    PI: 7.188
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco002597.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR152.61.5e-16104189191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                  +fY++YA ++GF v+ ++sk+  ++g++ +    C++ g  + ++++    ++++ +++t+C ak+++  ++dg  +v++l  eHnH+l+p
  Aco002597.1 104 SFYHDYAISTGFGVKCQYSKYD-KEGRCRCIVISCNRDGIVKYKTES----HSSELTKKTNCMAKIHLGYRDDGFLHVKQLIVEHNHPLFP 189
                  5****************99998.6777***************98877....889999********************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.5E-13104189IPR004330FAR1 DNA binding domain
CDDcd144730.00781173243No hitNo description
PROSITE profilePS509669.334311347IPR007527Zinc finger, SWIM-type
PfamPF044346.9E-5311342IPR007527Zinc finger, SWIM-type
SMARTSM005750.0076322349IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MVQFSRVSPA NALSDERSKT PFPPPLYFAP SPNPNSPSSY PIQNNRDLIR SSMNWSFGAA  60
VTQEPVAEIG QQPDISSPQM TAEEGDSATP KVGMKFKNAE EAFSFYHDYA ISTGFGVKCQ  120
YSKYDKEGRC RCIVISCNRD GIVKYKTESH SSELTKKTNC MAKIHLGYRD DGFLHVKQLI  180
VEHNHPLFPG MSVTLVSESM KSFFAEYVHN KFTVRQFLRK YETIVQKMHK KEVQADIESL  240
HKTPQLITQL YMEEQLGKVY TTDMFKVFQA EVRALIYCIS SVVEVNGPIR TFHVKERVRA  300
KGSKSMKSKI YEVTFDENEL ELRCICCLFE YRGVLCRHAL SVICFENIVE IPSKYVLERW  360
RKDYKRMLAL SCFPDDVMVD GQLERHESFY RCCLKLSEIG LMSDEKYEFG IKVVNEAMQK  420
LLAEDSSFET VQHKNLSCNV AQTSSLVTFT LNNDAYTGNG DDRTANFAHV GQAVNHSHYE  480
FFQERAQTVQ QLAGFRSETE WRLQQFFQEA QTPETTPAPR PW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010932932.11e-147PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.12e-47FAR1-related sequence 6